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Genes
Phenotypes
Unigenes
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Markers
BACs
Annotations
ESTs and libraries
Insitu database
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Glossary
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maps
Tomato-EXPEN 2000
Tomato physical map
Tomato contig map
Tomato IL map
Tomato FISH map
Tomato AGP map
Tomato ITAG map
Pepper-AC99
Pepper-FA03
Potato-TXB 1992
Eggplant-LXM 2002
Tobacco SSR 2007
Arabidopsis COSII
Comparative viewer...
See all available maps...
sequencing
International Tomato Sequencing Project
Solanaceae project (SOL)
U.S. tomato sequencing project
Browse Tomato Genome Data
tools
Sequence Analysis
BLAST
Alignment Analyzer
Tree Browser
Intron Finder
Mapping
Comparative Viewer
Fast Mapping
CAPS Designer
Seed BAC Finder
Molecular Biology
Primer 3
Signal Peptide Finder
Systems Biology
SolCyc Biochemical Pathways
Bulk Query
Unigene and BAC information
FTP Site
ID Converter (SGN <=> TIGR)
Other
SGN Ontology Browser [beta]
log in
NCBI BLAST v. 2.2.15 [Oct-15-2006]
Simple
Advanced
Sequence Set
All SGN Marker Sequences (11-14-08)
Current ITAG-predicted CDS (11-21-08)
Current ITAG-predicted cDNAs (11-21-08)
Current ITAG-predicted proteins (11-21-08)
MIPS repeat collection (11-05-08)
SGN UniRepeats repeat collection (11-21-08)
TIGR tomato/arabidopsis repeat collection (11-13-08)
Tomato BAC seqs (RepeatMasker, SGN UniRepeats) (11-20-08)
Tomato BAC sequences (11-21-08)
Tomato Combined Clone-end Sequences (BACs and Fosmids) (11-21-08)
Tomato EcoRI BAC-end Sequences (11-21-08)
Tomato Fosmid End Sequences (11-21-08)
Tomato Genome Contigs (11-14-08)
Tomato HindIII BAC-end Sequences (11-21-08)
Tomato MboI BAC-end Sequences (11-21-08)
Arabidopsis thaliana Mitochondria (11-16-08)
Nicotiana tabacum Chloroplast (11-06-08)
Tomato chloroplast genome, cultivar IPA-6 (11-13-08)
All SGN ESTs (07-22-05)
SGN Capsicum annuum (pepper) ESTs (12-15-03)
SGN Ipomoea batatas (sweet potato) ESTs (11-08-08)
SGN Nicotiana benthamiana ESTs (11-08-08)
SGN Nicotiana sylvestris (wood tobacco) ESTs (11-08-08)
SGN Nicotiana tabacum (common tobacco) ESTs (11-06-08)
SGN Petunia ESTs (02-19-04)
SGN Solanum melongena (eggplant) ESTs (01-13-04)
SGN Solanum tuberosum (potato) ESTs (07-22-05)
Tomato ESTs (07-18-08)
All current SGN Unigenes (11-05-08)
Capsicum Combined (pepper) Unigenes (11-12-08)
Coffea canephora (rubusta coffee) Unigenes (11-16-08)
Ipomoea batatas (sweet potato) Unigenes (build 27-05-08) (11-07-08)
Lycopersicon Combined (Tomato) Unigenes (11-05-08)
Nicotiana benthamiana Unigenes (build 04-08-08) (11-08-08)
Nicotiana sylvestris (wood tobacco) Unigenes (build 05-06-08) (11-07-08)
Nicotiana tabacum (common tobacco) Unigenes (build 17-07-08) (11-06-08)
Petunia hybrida Unigenes (11-12-08)
Solanum melongena (eggplant) Unigenes (11-12-08)
Solanum tuberosum (potato) Unigenes (11-16-08)
AGI CDS (arabidopsis.org) (11-11-08)
AGI Genes (arabidopsis.org) (11-11-08)
AGI Proteins (arabidopsis.org) (11-11-08)
AGI whole genome (arabidopsis.org) (11-11-08)
NCBI NR non-redundant protein sequence database (11-06-08)
NCBI UniVec vector sequences (11-13-08)
SGN Tomato Combined - genomic and unigene sequences (11-17-08)
All SGN loci (related unigenes and GenBank sequences) (11-20-08)
E. coli K12 Genome (11-14-08)
Lambda phage genome (11-06-08)
Tomato rRNA (11-06-08)
UniProtKB/Swiss-Prot full-length annotated proteins (11-14-08)
db details
Program
BLASTN (nucleotide to nucleotide)
TBLASTX (protein to protein; both database and query are translated)
TBLASTN (protein to nucleotide; database translated to protein)
Query sequence
single sequence only, use Advanced for multiple
Expect (e-value) Threshold
Substitution Matrix
BLOSUM62 (default)
BLOSUM80 (recent divergence)
BLOSUM80 (ancient divergence)
PAM30
PAM70
Show Graphics
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none
alignment summary only
conservedness histogram only
Max. hits to show